Basic Information
Locus ID:
Chr17G013530
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 38213929 | 38216332 | + | Chr17G013530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 23 | 135 | 2.5E-19 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 140 | 187 | 1.1E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 132 | 191 | 5.54E-20 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 1 | 130 | 3.2E-27 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 202 | 4.0E-22 | IPR013083 |
| SMART | SM00249 | PHD_3 | 140 | 187 | 2.9E-10 | IPR001965 |
| SMART | SM00439 | BAH_4 | 21 | 136 | 1.6E-33 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 136 | 23.225782 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 138 | 189 | 9.2141 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 141 | 186 | - | IPR019786 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_012702501.1 | chromatin remodeling protein EBS [Setaria italica] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | K3YJM0 | Chromatin remodeling protein EBS-like OS=Setaria italica OX=4555 GN=101768050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology