Basic Information
Locus ID:
Chr17G011830
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 30163994 | 30210727 | - | Chr17G011830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 273 | 375 | 1.18746E-25 | - |
| CDD | cd00030 | C2 | 444 | 540 | 9.31204E-28 | - |
| Pfam | PF00168 | C2 domain | 442 | 534 | 1.0E-25 | IPR000008 |
| Pfam | PF00168 | C2 domain | 271 | 375 | 4.9E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 81 | 258 | 1.7E-16 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 441 | 560 | 2.56E-33 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 269 | 401 | 1.08E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 263 | 399 | 5.4E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 423 | 560 | 8.8E-36 | IPR035892 |
| SMART | SM00239 | C2_3c | 272 | 372 | 2.5E-22 | IPR000008 |
| SMART | SM00239 | C2_3c | 443 | 541 | 9.1E-24 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 424 | 542 | 21.535854 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 249 | 373 | 20.591328 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 76 | 258 | 27.615345 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 507 | 515 | 8.8E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 459 | 471 | 8.8E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 485 | 498 | 8.8E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_002461108.1 | synaptotagmin-5 [Sorghum bicolor] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D6F2D9 | Synaptotagmin-5 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d007034 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology