Basic Information
Locus ID:
Chr17G007450
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 12235479 | 12236036 | + | Chr17G007450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 126 | 164 | 8.81614E-16 | - |
| Pfam | PF17123 | RING-like zinc finger | 126 | 152 | 7.9E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 170 | 9.34E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 89 | 169 | 3.9E-15 | IPR013083 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01880.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025809250.1 | RING-H2 finger protein ATL74-like [Panicum hallii] | 0 |
| Q9LZV8 | RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3H5H2 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_3G007800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Sporobolus alterniflorus | 2 | Chr17G007450, Chr19G011700 |