HalophFGD

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Basic Information
Locus ID: Chr17G006720
Species & Taxonomic ID: Sporobolus alterniflorus & 29706
Genome Assembly: GWHCBIM00000000
Description: WD40-like Beta Propeller Repeat
Maps and Mapping Data
Chromosome Start End Strand ID
GWHCBIM00000017 10922186 10923474 - Chr17G006720
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
0.00 0.00 Da 0.00 0.00 0.00
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF69304 Tricorn protease N-terminal domain 157 286 6.54E-9 -
Gene3D G3DSA:2.120.10.30 - 140 292 4.1E-9 IPR011042
Best hit
Source Best Hit ID Description E-value
RefSeq XP_002437598.1 uncharacterized protein LOC8069196 [Sorghum bicolor] 0
TrEMBL A0A5J9SNN2 Peptidase_S9 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_53943 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Aizoaceae Mesembryanthemum crystallinum 11 gene_12213, gene_12215, gene_12216, gene_7196, gene_7197 ...
gene_7198, gene_7199, gene_7200, gene_7201, gene_7202, gene_7203
Amaranthaceae Atriplex hortensis 1 Ah031551
Amaranthaceae Beta vulgaris 6 BVRB_4g089400, BVRB_4g089410, BVRB_4g089450, BVRB_4g089460 ...
BVRB_4g089520, BVRB_4g089530
Amaranthaceae Salicornia bigelovii 5 Sbi_jg18938, Sbi_jg18940, Sbi_jg37394, Sbi_jg37395 ...
Sbi_jg37396
Amaranthaceae Salicornia europaea 2 Seu_jg5232, Seu_jg5234
Amaranthaceae Suaeda aralocaspica 2 GOSA_00017415, GOSA_00017418
Amaranthaceae Suaeda glauca 7 Sgl23475, Sgl28602, Sgl54511, Sgl54513, Sgl59850, Sgl71538 ...
Sgl75116
Amaranthaceae Chenopodium album 4 gene:ENSEOMG00000005844, gene:ENSEOMG00000021703 ...
gene:ENSEOMG00000025400, gene:ENSEOMG00000033699
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.4AG0023640, CQ.Regalona.r1.5BG0017600 ...
CQ.Regalona.r1.7AG0023140, CQ.Regalona.r1.7AG0023150
Apiaceae Apium graveolens 9 Ag10G01555, Ag3G01091, Ag3G01092, Ag7G02070, Ag7G02072 ...
Ag7G02076, Ag7G02077, Ag7G02078, Ag7G02080
Asparagaceae Asparagus officinalis 2 AsparagusV1_07.2391.V1.1, AsparagusV1_Unassigned.198.V1.1
Poaceae Echinochloa crus-galli 12 AH04.434, AH05.523, AH05.525, AH08.356, AH08.708, BH05.577 ...
BH05.579, CH04.475, CH05.654, CH05.656, Contig1934.2, Contig522.11
Poaceae Eleusine coracana subsp. coracana 14 gene-QOZ80_4BG0352250, gene-QOZ80_6AG0505730 ...
gene-QOZ80_6AG0517360, gene-QOZ80_6BG0457770, gene-QOZ80_6BG0469340, gene-QOZ80_6BG0469350, gene-QOZ80_9AG0677600, gene-QOZ80_9AG0681550, gene-QOZ80_9AG0681610, gene-QOZ80_9AG0681850, gene-QOZ80_9AG0686610, gene-QOZ80_9BG0701290, gene-QOZ80_9BG0706450, gene-QOZ80_9BG0712830
Poaceae Hordeum vulgare 4 HORVU.MOREX.r3.4HG0381190.1.CDS1 ...
HORVU.MOREX.r3.5HG0420780.1, HORVU.MOREX.r3.7HG0635330.2, HORVU.MOREX.r3.7HG0635370.1
Poaceae Lolium multiflorum 5 gene-QYE76_002233, gene-QYE76_008565, gene-QYE76_008610 ...
gene-QYE76_010254, gene-QYE76_068397
Poaceae Oryza coarctata 2 Oco05G011910, Oco06G014520
Poaceae Oryza sativa 3 LOC_Os03g19990.1, LOC_Os03g28980.1, LOC_Os12g24330.1
Poaceae Paspalum vaginatum 3 gene-BS78_05G244700, gene-BS78_05G265800, gene-BS78_K297700
Poaceae Puccinellia tenuiflora 4 Pt_Chr0401391, Pt_Chr0401407, Pt_Chr0404116, Pt_Chr0703511
Poaceae Sporobolus alterniflorus 4 Chr16G007380, Chr17G006720, Chr26G000170, Chr31G004380
Poaceae Thinopyrum elongatum 9 Tel3E01G844700, Tel5E01G025800, Tel5E01G888400 ...
Tel5E01G888500, Tel6E01G109300, Tel6E01G109500, Tel6E01G109800, Tel6E01G113300, Tel7E01G748000
Poaceae Triticum dicoccoides 12 gene_TRIDC3BG083400, gene_TRIDC4AG047760 ...
gene_TRIDC4AG072200, gene_TRIDC5AG001880, gene_TRIDC5BG001630, gene_TRIDC5BG083370, gene_TRIDC6AG006960, gene_TRIDC6BG007070, gene_TRIDC6BG007170, gene_TRIDC6BG009850, gene_TRIDC7AG001000, gene_TRIDC7BG055080
Poaceae Triticum aestivum 22 TraesCS3B02G577400.1, TraesCS3D02G516400.1 ...
TraesCS4A02G124500.1, TraesCS4A02G484600.1, TraesCS4B02G180000.1.cds1, TraesCS5A02G011600.1, TraesCS5B02G009500.1, TraesCS5D02G016500.1, TraesCS5D02G550100.1, TraesCS6A02G057900.1, TraesCS6B02G056200.1, TraesCS6B02G056600.1, TraesCS6B02G057400.1, TraesCS6B02G082900.2, TraesCS6D02G047500.2, TraesCS6D02G047800.2, TraesCS6D02G058200.1, TraesCS7A02G010400.2, TraesCS7B02G344500.1, TraesCS7D02G010100.1, TraesCS7D02G434600.1, TraesCSU02G061800.1
Poaceae Zea mays 1 Zm00001eb418440_P002
Poaceae Zoysia japonica 1 nbis-gene-38693
Poaceae Zoysia macrostachya 1 Zma_g17878
Portulacaceae Portulaca oleracea 12 evm.TU.LG02.525, evm.TU.LG02.527, evm.TU.LG02.534 ...
evm.TU.LG02.535, evm.TU.LG02.538, evm.TU.LG02.542, evm.TU.LG09.1768, evm.TU.LG09.1775, evm.TU.LG09.1778, evm.TU.LG09.1779, evm.TU.LG09.1782, evm.TU.LG09.1786
Posidoniaceae Posidonia oceanica 4 gene.Posoc07g01380, gene.Posoc07g01390, gene.Posoc07g01450 ...
gene.Posoc07g01460
Tamaricaceae Tamarix chinensis 7 TC04G1422, TC04G1429, TC04G1437, TC04G1443, TC04G1451 ...
TC04G1454, TC04G1456
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.