Basic Information
Locus ID:
Chr17G006050
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 8488024 | 8490618 | + | Chr17G006050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 358 | 548 | 2.23277E-48 | - |
| CDD | cd10320 | RGL4_N | 1 | 180 | 4.8043E-51 | - |
| CDD | cd10316 | RGL4_M | 219 | 309 | 8.19292E-27 | IPR029413 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 243 | 309 | 1.5E-19 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 1 | 86 | 9.3E-29 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 356 | 547 | 2.6E-48 | IPR029411 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 6 | 182 | 5.02E-6 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 354 | 548 | 1.24E-39 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 220 | 310 | 8.04E-7 | IPR013784 |
| Gene3D | G3DSA:2.60.40.1120 | - | 215 | 309 | 3.6E-6 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 354 | 548 | 3.3E-17 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 1 | 187 | 1.4E-11 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.3 | - | 0 |
| RefSeq | XP_025828146.1 | rhamnogalacturonate lyase B-like [Panicum hallii] | 0 |
| TrEMBL | A0A5J9UPC5 | rhamnogalacturonan endolyase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_27817 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology