Basic Information
Locus ID:
Chr17G004920
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 6234960 | 6256475 | + | Chr17G004920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 65 | 181 | 2.31284E-33 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 206 | 534 | 8.18895E-162 | - |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 895 | 1104 | 1.1E-54 | IPR029346 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 633 | 885 | 4.9E-74 | IPR024729 |
| Pfam | PF00917 | MATH domain | 70 | 190 | 3.7E-18 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 208 | 529 | 3.4E-46 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 203 | 559 | 1.57E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 64 | 194 | 3.27E-38 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 62 | 204 | 1.2E-49 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 205 | 533 | 2.3E-88 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 811 | 908 | 1.2E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 693 | 810 | 2.5E-41 | - |
| SMART | SM00061 | math_3 | 65 | 169 | 4.1E-17 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 63 | 188 | 36.192894 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 208 | 532 | 40.189102 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 209 | 224 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 448 | 465 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 60 | - | - |
| Coils | Coil | Coil | 548 | 568 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_034607286.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X3 [Setaria viridis] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U6TG93 | ubiquitinyl hydrolase 1 OS=Setaria viridis OX=4556 GN=SEVIR_8G169700v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology