Basic Information
Locus ID:
Chr17G004270
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 5314061 | 5318110 | + | Chr17G004270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 158 | 235 | 2.6E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 97 | 358 | 7.51E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 359 | 1.8E-60 | IPR015943 |
| SMART | SM00320 | WD40_4 | 315 | 354 | 0.056 | IPR001680 |
| SMART | SM00320 | WD40_4 | 182 | 220 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 272 | 311 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 140 | 178 | 0.029 | IPR001680 |
| Coils | Coil | Coil | 130 | 150 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_025827591.1 | SEC12-like protein 2 isoform X1 [Panicum hallii] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A5J9V368 | ANAPC4_WD40 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_21951 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology