Basic Information
Locus ID:
Chr17G004160
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 5189259 | 5194632 | + | Chr17G004160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 261 | 335 | 7.65954E-34 | - |
| CDD | cd12352 | RRM1_TIA1_like | 59 | 129 | 2.55821E-35 | - |
| CDD | cd12619 | RRM2_PUB1 | 143 | 217 | 2.09517E-46 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 59 | 125 | 7.6E-14 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 144 | 214 | 2.8E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 263 | 329 | 6.5E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 56 | 220 | 8.15E-46 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 252 | 340 | 2.82E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 140 | 242 | 5.8E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 139 | 3.6E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 243 | 339 | 2.6E-23 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 262 | 331 | 1.6 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 143 | 216 | 0.051 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 58 | 127 | 3.6E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 262 | 331 | 1.5E-18 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 143 | 216 | 3.1E-21 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 57 | 131 | 15.749695 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 261 | 335 | 16.261356 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 142 | 220 | 17.506401 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | NP_001150056.2 | Oligouridylate-binding protein 1B [Zea mays] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UKX4 | Oligouridylate binding protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_26337 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology