Basic Information
Locus ID:
Chr17G003270
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 3908576 | 3910612 | + | Chr17G003270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 62 | 2.29E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 123 | 286 | 2.98E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 97 | 296 | 8.5E-28 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 24 | 66 | 7.7E-8 | - |
| SMART | SM00367 | LRR_CC_2 | 254 | 279 | 23.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 229 | 253 | 550.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 131 | 156 | 36.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 157 | 182 | 0.026 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57900.1 | SKP1 interacting partner 1. F-box protein, interacts with SKP1/ASK1 subunit of SCF ubiquitin ligase in a glucose-dependent manner | 0 |
| RefSeq | XP_004973128.1 | F-box protein SKIP1 [Setaria italica] | 0 |
| Q9FDX1 | F-box protein SKIP1 OS=Arabidopsis thaliana OX=3702 GN=SKIP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W2W6 | F-box domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_08672 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4007 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9226 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah014957, Ah014958, Ah014963 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g191330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24752, Sbi_jg8619 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19990 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022305 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42666, Sgl47400 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000010769, gene:ENSEOMG00000033405 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.8AG0016970, CQ.Regalona.r1.8AG0016980 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30265550 |
| Apiaceae | Apium graveolens | 2 | Ag2G00406, Ag2G00407 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G014620, COCNU_01G014630, scaffold003326G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722057 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G07890 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G30640.1, AT5G57900.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014209m.g.v1.0, Thhalv10014217m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 5 | Sp3g32280.v2.2, Sp6g19570.v2.2, Sp7g28520.v2.2 ... |
| Brassicaceae | Brassica nigra | 9 | BniB02g037230.2N, BniB02g084890.2N, BniB02g084900.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2590 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2738 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g07420 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g10290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-282 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG06.872, evm.TU.LG06.874, evm.TU.LG07.306 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G01159, Lb3G16712, Lb7G33206 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.940, BH08.963, CH08.1082 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8BG0652940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0011890.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_032262, gene-QYE76_032275 |
| Poaceae | Oryza coarctata | 2 | Oco15G005320, Oco16G005070 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g16840.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_10G167800, gene-BS78_K076700, gene-BS78_K105400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402798 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G003600, Chr17G003270, Chr20G008910 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG007670, gene_TRIDC1BG009770 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G056500.2, TraesCS1B02G073600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb177870_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44740, nbis-gene-57102 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22736 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2558, evm.TU.LG23.788 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g13390 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2165 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25319 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-7509, nbisL1-mrna-7512 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-4916, nbisL1-mrna-4917 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1266 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000935 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17486, nbisL1-mrna-1927 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-9226, nbisL1-mrna-9228 |
| Salicaceae | Populus euphratica | 1 | populus_peu05571 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132602068, gene-LOC132606164, gene-LOC132630842 |
| Solanaceae | Solanum chilense | 1 | SOLCI000280200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024020 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9538 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0411 |