Basic Information
Locus ID:
Chr17G003170
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 3702245 | 3707058 | - | Chr17G003170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 321 | 370 | 0.00262721 | - |
| Pfam | PF00023 | Ankyrin repeat | 224 | 254 | 2.3E-5 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 1.2E-6 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 206 | 1.9E-14 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 319 | 377 | 1.98E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 272 | 6.68E-48 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 307 | 389 | 3.9E-8 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 150 | 282 | 3.9E-23 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 10 | 145 | 2.4E-30 | IPR036770 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0088 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 4.3E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 2.3E-5 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 370 | 7.2E-5 | IPR001841 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 1.4E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 7.8 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 12.76955 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 12.636 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 371 | 10.320587 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 10.524231 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.51093 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 208 | 12.328365 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 11.850801 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 11.727859 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 8.74663 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 5.0E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 5.0E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_004973101.1 | probable E3 ubiquitin-protein ligase XBOS35 [Setaria italica] | 0 |
| Q7EZ44 | Probable E3 ubiquitin-protein ligase XBOS35 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS35 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9W3Z1 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_08617 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology