Basic Information
Locus ID:
Chr17G002300
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 2454557 | 2459696 | - | Chr17G002300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 1 | 139 | 9.3E-58 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 64 | 137 | 1.3E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 244 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_025826441.1 | ubiquitin fusion degradation protein 1 homolog [Panicum hallii] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3L6PRV2 | Ubiquitin fusion degradation protein 1 homolog OS=Panicum miliaceum OX=4540 GN=C2845_PM16G16720 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology