Basic Information
Locus ID:
Chr17G001980
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000017 | 2096836 | 2101557 | + | Chr17G001980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00176 | SNF2 family N-terminal domain | 307 | 497 | 9.4E-24 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 281 | 499 | 3.72E-20 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 415 | 505 | 1.4E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 263 | 354 | 1.6E-12 | IPR038718 |
| SMART | SM00487 | ultradead3 | 290 | 536 | 0.0049 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 516 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 542 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 70 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.4 | - | 0 |
| RefSeq | XP_004957553.1 | helicase-like transcription factor CHR28 isoform X1 [Setaria italica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W4K6 | Helicase-like transcription factor CHR28 OS=Eragrostis curvula OX=38414 GN=EJB05_09494 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology