Basic Information
Locus ID:
Chr16G018400
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 48051544 | 48057847 | + | Chr16G018400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 141 | 191 | 3.58136E-12 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 210 | 271 | 6.3E-14 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 137 | 219 | 1.06E-17 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 551 | 579 | 1.02E-6 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 290 | 317 | 3.18E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 210 | 278 | 9.89E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 224 | 2.5E-17 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 267 | 515 | 4.6E-66 | - |
| Gene3D | G3DSA:2.30.30.380 | - | 549 | 580 | 9.2E-8 | - |
| SMART | SM00647 | ibrneu5 | 210 | 271 | 1.4E-19 | IPR002867 |
| SMART | SM00547 | zf_4 | 554 | 578 | 2.7E-4 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 137 | 351 | 39.945602 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 552 | 580 | 8.298278 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 141 | 187 | 9.258371 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 556 | 575 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 549 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_034599821.1 | probable E3 ubiquitin-protein ligase ARI8 [Setaria viridis] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6U736 | RBR-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_6G236900v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology