Basic Information
Locus ID:
Chr16G017610
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 47163286 | 47170864 | + | Chr16G017610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 159 | 233 | 1.54743E-51 | - |
| CDD | cd12354 | RRM3_TIA1_like | 282 | 356 | 1.69326E-30 | - |
| CDD | cd12352 | RRM1_TIA1_like | 75 | 145 | 8.34846E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 75 | 141 | 1.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 284 | 350 | 7.4E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 160 | 230 | 1.5E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 71 | 239 | 8.15E-44 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 270 | 360 | 3.8E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 5 | 157 | 7.8E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 258 | 360 | 7.5E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 158 | 245 | 1.2E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 74 | 143 | 1.9E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 159 | 232 | 1.6E-22 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 283 | 352 | 4.3E-15 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 283 | 352 | 1.8 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 159 | 232 | 0.53 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 73 | 147 | 15.425642 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 282 | 356 | 15.800861 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 158 | 236 | 16.773018 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 279 | - | - |
| Coils | Coil | Coil | 8 | 37 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_002445861.1 | oligouridylate-binding protein 1B [Sorghum bicolor] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835A262 | Oligouridylate-binding protein 1-like OS=Digitaria exilis OX=1010633 GN=HU200_065738 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology