Basic Information
Locus ID:
Chr16G017360
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 46966236 | 46971431 | + | Chr16G017360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 157 | 231 | 1.86043E-50 | - |
| CDD | cd12354 | RRM3_TIA1_like | 280 | 354 | 9.64356E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 158 | 228 | 8.5E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 73 | 139 | 1.6E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 282 | 348 | 7.1E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 268 | 358 | 1.34E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 69 | 238 | 2.3E-43 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 155 | 248 | 1.0E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 256 | 358 | 7.9E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 5 | 154 | 1.2E-25 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 72 | 141 | 1.9E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 281 | 350 | 1.3E-15 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 281 | 350 | 0.92 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 157 | 230 | 5.9E-22 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 157 | 230 | 0.48 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 71 | 145 | 15.425642 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 156 | 234 | 16.517189 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 280 | 354 | 15.852027 | IPR000504 |
| Coils | Coil | Coil | 8 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_025820398.1 | oligouridylate-binding protein 1B-like [Panicum hallii] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835AB47 | Oligouridylate-binding protein 1B-like OS=Digitaria exilis OX=1010633 GN=HU200_061832 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology