Basic Information
Locus ID:
Chr16G016800
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 46269167 | 46280190 | + | Chr16G016800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 89 | 386 | 5.77722E-173 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 403 | 705 | 2.22599E-148 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 408 | 701 | 2.6E-30 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 89 | 386 | 3.92E-44 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 402 | 705 | 2.3E-45 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 87 | 387 | 7.9E-37 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 401 | 706 | 1.3E-45 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 403 | 706 | 29.644114 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 89 | 387 | 26.680277 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 780 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 757 | 780 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66970.1 | SHV3-like 2. | 0 |
| RefSeq | XP_004973844.1 | glycerophosphodiester phosphodiesterase GDPDL4 isoform X1 [Setaria italica] | 0 |
| Q7Y208 | Glycerophosphodiester phosphodiesterase GDPDL1 OS=Arabidopsis thaliana OX=3702 GN=GDPDL1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9T427 | glycerophosphodiester phosphodiesterase OS=Eragrostis curvula OX=38414 GN=EJB05_48409 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology