Basic Information
Locus ID:
Chr16G016530
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 45965636 | 45968470 | + | Chr16G016530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 183 | 221 | 9.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 346 | 0.0023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 49 | 87 | 2.7E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 25 | 347 | 6.77E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 161 | 347 | 3.1E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 160 | 6.3E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 264 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 87 | 5.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 182 | 221 | 0.035 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 346 | 4.8E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 314 | 347 | 12.288313 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 55 | 96 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 55 | 90 | 11.418318 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 189 | 230 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 314 | 347 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 189 | 224 | 8.755605 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 333 | 347 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 208 | 222 | 1.4E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 74 | 88 | 1.4E-5 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13340.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010513432.2 | PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Camelina sativa] | 0 |
| Q9LYK6 | Protein ANTHESIS POMOTING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=APRF1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9B8Q5 | WD_REPEATS_REGION domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology