Basic Information
Locus ID:
Chr16G016320
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Hsp90 protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 45645723 | 45649998 | - | Chr16G016320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16927 | HATPase_Hsp90-like | 87 | 283 | 3.83152E-95 | - |
| Pfam | PF00183 | Hsp90 protein | 265 | 749 | 2.3E-190 | IPR001404 |
| Pfam | PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 101 | 260 | 3.8E-12 | IPR003594 |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 77 | 293 | 8.51E-60 | IPR036890 |
| SUPERFAMILY | SSF110942 | HSP90 C-terminal domain | 609 | 730 | 7.06E-33 | IPR037196 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 330 | 588 | 2.81E-90 | IPR020568 |
| Gene3D | G3DSA:3.30.230.80 | - | 328 | 500 | 6.4E-74 | - |
| Gene3D | G3DSA:3.40.50.11260 | - | 501 | 587 | 4.8E-33 | - |
| Gene3D | G3DSA:3.30.565.10 | - | 64 | 308 | 8.2E-87 | IPR036890 |
| Gene3D | G3DSA:1.20.120.790 | - | 588 | 734 | 1.3E-51 | IPR037196 |
| SMART | SM00387 | HKATPase_4 | 100 | 262 | 1.6E-6 | IPR003594 |
| PIRSF | PIRSF002583 | HSP90_HTPG | 50 | 767 | 6.3E-238 | IPR001404 |
| ProSitePatterns | PS00298 | Heat shock hsp90 proteins family signature. | 98 | 107 | - | IPR019805 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 78 | 98 | 6.8E-62 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 269 | 287 | 6.8E-62 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 99 | 121 | 6.8E-62 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 148 | 165 | 6.8E-62 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 166 | 183 | 6.8E-62 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 250 | 267 | 6.8E-62 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 195 | 217 | 6.8E-62 | IPR020575 |
| Hamap | MF_00505 | Chaperone protein HtpG [htpG]. | 75 | 731 | 26.046198 | IPR001404 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 739 | 779 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04030.1 | Chaperone protein htpG family protein. Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR. | 0 |
| RefSeq | NP_001305306.1 | Heat shock protein 90-5, chloroplastic [Zea mays] | 0 |
| Q9SIF2 | Heat shock protein 90-5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HSP90-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D6QK75 | Heat shock protein 90-5 chloroplastic OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d052809 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology