Basic Information
Locus ID:
Chr16G015190
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
A20-like zinc fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 43681662 | 43682760 | - | Chr16G015190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01754 | A20-like zinc finger | 116 | 138 | 2.3E-7 | IPR002653 |
| Pfam | PF01428 | AN1-like Zinc finger | 275 | 311 | 1.4E-8 | IPR000058 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 116 | 152 | 3.14E-9 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 202 | 228 | 9.84E-6 | - |
| SUPERFAMILY | SSF118310 | AN1-like Zinc finger | 263 | 329 | 6.15E-26 | IPR035896 |
| Gene3D | G3DSA:1.20.5.4770 | - | 186 | 242 | 1.0E-11 | - |
| Gene3D | G3DSA:4.10.1110.10 | - | 250 | 329 | 2.9E-26 | IPR035896 |
| Gene3D | G3DSA:1.20.5.4770 | - | 100 | 166 | 1.7E-13 | - |
| SMART | SM00259 | A20_3 | 114 | 138 | 3.5E-4 | IPR002653 |
| SMART | SM00259 | A20_3 | 197 | 222 | 1.9E-4 | IPR002653 |
| SMART | SM00154 | AN1_Zf_4 | 275 | 312 | 6.4E-16 | IPR000058 |
| ProSiteProfiles | PS51036 | Zinc finger A20-type profile. | 111 | 145 | 9.666561 | IPR002653 |
| ProSiteProfiles | PS51039 | Zinc finger AN1-type profile. | 272 | 315 | 11.732775 | IPR000058 |
| ProSiteProfiles | PS51036 | Zinc finger A20-type profile. | 194 | 229 | 9.102426 | IPR002653 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 174 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12040.1 | A20/AN1-like zinc finger family protein. | 0 |
| RefSeq | XP_002444399.1 | zinc finger A20 and AN1 domain-containing stress-associated protein 9 [Sorghum bicolor] | 0 |
| Q6Z541 | Zinc finger A20 and AN1 domain-containing stress-associated protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP12 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9T382 | Zinc finger A20 and AN1 domain-containing stress-associated protein 1 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_48903 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9345 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18236 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014100 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g154040 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg28251, Sbi_jg34116, Sbi_jg43168, Sbi_jg43183 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7222 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015143 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl31324, Sgl36177, Sgl36663, Sgl41466 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003807, gene:ENSEOMG00000015641 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0001320, CQ.Regalona.r1.6BG0001400 |
| Apiaceae | Apium graveolens | 1 | Ag8G01391 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G007320, COCNU_12G005730 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703133, gene-LOC103705897 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1361.V1.1, AsparagusV1_08.2429.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G25195 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G14270.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008130m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g12620.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g005930.2N, BniB06g039270.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0089 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0078 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g11580 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0903s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g12320 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.241 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G13317 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.1899, AH08.1658, BH03.2024, BH08.1706, CH03.2247 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0535030, gene-QOZ80_6BG0488240 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0484540.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005051, gene-QYE76_031410, gene-QYE76_059223 |
| Poaceae | Oryza coarctata | 4 | Oco15G009200, Oco16G008620, Oco17G004730, Oco18G004790 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g33900.1, LOC_Os09g24670.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G181600, gene-BS78_07G146700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0405385, Pt_Chr0503793 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr14G013800, Chr16G015180, Chr16G015190, Chr17G014640 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G372500, Tel7E01G314100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5AG036360, gene_TRIDC5BG038350 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G228100.1, TraesCS5B02G226900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb041360_P002, Zm00001eb312490_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17032, nbis-gene-30857 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g24115, Zma_g30304 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.256, evm.TU.LG12.1449, evm.TU.LG13.362 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g28520 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.630 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26811 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20132 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15744 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.326 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002663 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11337 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17864 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641579 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018466 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14509 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3307 |
| Zosteraceae | Zostera marina | 1 | Zosma01g04890.v3.1 |