Basic Information
Locus ID:
Chr16G012520
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 30045954 | 30077445 | + | Chr16G012520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 423 | 519 | 6.6884E-28 | - |
| CDD | cd00030 | C2 | 252 | 354 | 1.71618E-25 | - |
| Pfam | PF00168 | C2 domain | 421 | 513 | 4.8E-26 | IPR000008 |
| Pfam | PF00168 | C2 domain | 250 | 354 | 5.8E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 420 | 539 | 1.32E-33 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 248 | 380 | 7.4E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 402 | 539 | 4.6E-36 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 246 | 387 | 1.2E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 251 | 351 | 4.2E-22 | IPR000008 |
| SMART | SM00239 | C2_3c | 422 | 520 | 1.1E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 403 | 521 | 21.542955 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 89 | 281 | 11.726004 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 228 | 352 | 20.364073 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 486 | 494 | 4.9E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 438 | 450 | 4.9E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 464 | 477 | 4.9E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_002461108.1 | synaptotagmin-5 [Sorghum bicolor] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D6F2D9 | Synaptotagmin-5 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d007034 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology