halophFGD

Basic Information

Locus ID: Chr16G009550

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: DNA-binding transcription factor activity

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000016	13560689	13566543	-	Chr16G009550

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14144	Seed dormancy control	251	324	2.2E-26	IPR025422
Pfam	PF00170	bZIP transcription factor	171	200	1.4E-8	IPR004827
SUPERFAMILY	SSF57959	Leucine zipper domain	171	204	5.14E-7	-
Gene3D	G3DSA:1.20.5.170	-	170	217	4.5E-10	-
SMART	SM00338	brlzneu	167	240	0.0011	IPR004827
ProSiteProfiles	PS51806	DOG1 domain profile.	233	446	31.242157	IPR025422
ProSiteProfiles	PS50217	Basic-leucine zipper (bZIP) domain profile.	169	213	8.875359	IPR004827
ProSitePatterns	PS00036	Basic-leucine zipper (bZIP) domain signature.	174	189	-	IPR004827
MobiDBLite	mobidb-lite	consensus disorder prediction	106	172	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	106	166	-	-
Coils	Coil	Coil	137	157	-	-
Coils	Coil	Coil	190	210	-	-

Gene Ontology

Biological Process:

GO:0006351 (DNA-templated transcription) GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0003700 (DNA-binding transcription factor activity) GO:0043565 (sequence-specific DNA binding)

KEGG Pathway

KO Term:

K14431 (transcription factor TGA)

Pathway:

ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G08320.1	bZIP transcription factor family protein.
RefSeq	XP_039823386.1	transcription factor TGAL4-like isoform X1 [Panicum virgatum]
Swiss-Prot	Q53Q70	Transcription factor TGAL4 OS=Oryza sativa subsp. japonica OX=39947 GN=TGAL4 PE=1 SV=1
TrEMBL	A0A5J9UST2	DOG1 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_29453 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	12	jg15946, jg16451, jg2092, jg31301, jg31379, jg33279, jg34913 ... jg35998, jg4379, jg8151, jg9175, jg9176
Aizoaceae	Mesembryanthemum crystallinum	5	gene_18435, gene_20455, gene_4580, gene_4700, gene_5688
Amaranthaceae	Atriplex hortensis	6	Ah021603, Ah022167, Ah025874, Ah025876, Ah028962, Ah032310
Amaranthaceae	Beta vulgaris	4	BVRB_2g041830, BVRB_3g060650, BVRB_3g062960, BVRB_7g176150
Amaranthaceae	Salicornia bigelovii	11	Sbi_jg13803, Sbi_jg26947, Sbi_jg30030, Sbi_jg33603 ... Sbi_jg33604, Sbi_jg43468, Sbi_jg52124, Sbi_jg58858, Sbi_jg59224, Sbi_jg63404, Sbi_jg63749
Amaranthaceae	Salicornia europaea	5	Seu_jg18436, Seu_jg23139, Seu_jg23486, Seu_jg8310 ... Seu_jg9721
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00002971, GOSA_00004200, GOSA_00013000, GOSA_00018442 ... GOSA_00018888, GOSA_00018890
Amaranthaceae	Suaeda glauca	11	Sgl02264, Sgl02651, Sgl07415, Sgl07809, Sgl34150, Sgl34383 ... Sgl39785, Sgl66215, Sgl70530, Sgl73174, Sgl76831
Amaranthaceae	Chenopodium album	14	gene:ENSEOMG00000001009, gene:ENSEOMG00000007280 ... gene:ENSEOMG00000011962, gene:ENSEOMG00000012450, gene:ENSEOMG00000013369, gene:ENSEOMG00000019881, gene:ENSEOMG00000026062, gene:ENSEOMG00000031158, gene:ENSEOMG00000031655, gene:ENSEOMG00000038805, gene:ENSEOMG00000039173, gene:ENSEOMG00000044376, gene:ENSEOMG00000044708, gene:ENSEOMG00000048642
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.2AG0004580, CQ.Regalona.r1.2BG0005330 ... CQ.Regalona.r1.3AG0022950, CQ.Regalona.r1.3BG0020750, CQ.Regalona.r1.3BG0023640, CQ.Regalona.r1.6AG0014960, CQ.Regalona.r1.6BG0015750, CQ.Regalona.r1.9BG0004880
Anacardiaceae	Pistacia vera	6	pistato.v30013020, pistato.v30056590, pistato.v30165080 ... pistato.v30165710, pistato.v30189040, pistato.v30225630
Apiaceae	Apium graveolens	12	Ag10G01635, Ag10G03033, Ag10G03037, Ag11G04371, Ag1G01018 ... Ag1G01559, Ag2G00201, Ag2G01539, Ag3G01443, Ag3G02807, Ag5G02787, Ag9G01476
Arecaceae	Cocos nucifera	11	COCNU_01G006950, COCNU_01G011850, COCNU_02G009930 ... COCNU_02G016490, COCNU_08G001790, COCNU_11G007010, COCNU_11G010540, COCNU_12G005120, COCNU_15G000530, scaffold006562G000010, scaffold006962G000020
Arecaceae	Phoenix dactylifera	11	gene-LOC103702425, gene-LOC103703223, gene-LOC103705026 ... gene-LOC103705377, gene-LOC103705788, gene-LOC103706198, gene-LOC103706220, gene-LOC103711410, gene-LOC103714951, gene-LOC103717994, gene-LOC113462423
Asparagaceae	Asparagus officinalis	7	AsparagusV1_01.221.V1.1, AsparagusV1_02.2001.V1.1 ... AsparagusV1_02.800.V1.1, AsparagusV1_05.1298.V1.1, AsparagusV1_06.1523.V1.1, AsparagusV1_07.770.V1.1, AsparagusV1_09.43.V1.1
Asteraceae	Flaveria trinervia	8	Ftri10G00448, Ftri11G00395, Ftri13G12814, Ftri16G33042 ... Ftri17G18416, Ftri2G02680, Ftri6G18210, Ftri6G26615
Brassicaceae	Arabidopsis thaliana	6	AT1G08320.1, AT1G68640.1, AT3G12250.4, AT5G06839.3 ... AT5G06950.1, AT5G06960.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10007490m.g.v1.0, Thhalv10014032m.g.v1.0 ... Thhalv10014082m.g.v1.0, Thhalv10015975m.g.v1.0, Thhalv10018547m.g.v1.0, Thhalv10021187m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g06960.v2.2, Sp3g10470.v2.2, Sp5g23740.v2.2 ... Sp6g35910.v2.2, Sp6g35920.v2.2, Sp6g36020.v2.2
Brassicaceae	Brassica nigra	10	BniB01g052700.2N, BniB02g004020.2N, BniB02g053890.2N ... BniB02g053950.2N, BniB03g046020.2N, BniB04g031330.2N, BniB05g028580.2N, BniB07g025810.2N, BniB07g056450.2N, BniB08g002890.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq03G2049, Ceq04G0901, Ceq04G1132, Ceq05G0903, Ceq05G1805
Casuarinaceae	Casuarina glauca	5	Cgl03G2188, Cgl04G1021, Cgl04G1300, Cgl05G0915, Cgl05G1796
Cymodoceaceae	Cymodocea nodosa	7	gene.Cymno02g05630, gene.Cymno04g08910, gene.Cymno04g13200 ... gene.Cymno06g08770, gene.Cymno07g00260, gene.Cymno08g08610, gene.Cymno18g01320
Hydrocharitaceae	Thalassia testudinum	8	gene.Thate01g03700, gene.Thate02g09560, gene.Thate02g17870 ... gene.Thate04g08200, gene.Thate06g11100, gene.Thate06g16930, gene.Thate08g06930, gene.Thate09g19910
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11613, nbisL1-mrna-8451
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG01.2625, evm.TU.LG02.2018, evm.TU.LG03.518 ... evm.TU.LG05.504, evm.TU.LG09.684
Plantaginaceae	Plantago ovata	8	Pov_00000022, Pov_00006915, Pov_00011195, Pov_00015807 ... Pov_00019309, Pov_00026541, Pov_00027404, Pov_00041236
Plumbaginaceae	Limonium bicolor	9	Lb1G00928, Lb1G02392, Lb1G07471, Lb2G12674, Lb2G12894 ... Lb2G12940, Lb3G16335, Lb3G19703, Lb6G30235
Poaceae	Echinochloa crus-galli	38	AH02.1293, AH02.1294, AH02.3618, AH02.3955, AH02.3956 ... AH03.1410, AH03.2405, AH04.362, AH05.1947, AH05.214, AH05.2259, AH06.1101, AH07.704, BH02.1345, BH02.3337, BH02.3971, BH03.1564, BH03.2530, BH03.4452, BH05.2074, BH05.2371, BH05.245, BH06.1131, BH07.4282, BH07.835, CH01.1514, CH02.1456, CH02.3897, CH03.1694, CH03.2729, CH04.324, CH04.325, CH05.2148, CH05.2457, CH05.299, CH06.1243, CH07.62, Contig2413.2
Poaceae	Eleusine coracana subsp. coracana	24	gene-QOZ80_1AG0003430, gene-QOZ80_1AG0037130 ... gene-QOZ80_1AG0040650, gene-QOZ80_1BG0051850, gene-QOZ80_1BG0087240, gene-QOZ80_1BG0090700, gene-QOZ80_2AG0104940, gene-QOZ80_2BG0158350, gene-QOZ80_3AG0246220, gene-QOZ80_3BG0281950, gene-QOZ80_5AG0368620, gene-QOZ80_5AG0371370, gene-QOZ80_5BG0416200, gene-QOZ80_5BG0418840, gene-QOZ80_6AG0516550, gene-QOZ80_6AG0521170, gene-QOZ80_6AG0539650, gene-QOZ80_6BG0468200, gene-QOZ80_6BG0474170, gene-QOZ80_6BG0493040, gene-QOZ80_7AG0582350, gene-QOZ80_7BG0613450, gene-QOZ80_9AG0674870, gene-QOZ80_9BG0698680
Poaceae	Hordeum vulgare	12	HORVU.MOREX.r3.1HG0069640.1, HORVU.MOREX.r3.1HG0074720.1 ... HORVU.MOREX.r3.2HG0110640.1, HORVU.MOREX.r3.3HG0260410.1, HORVU.MOREX.r3.3HG0295690.1, HORVU.MOREX.r3.3HG0300720.2, HORVU.MOREX.r3.4HG0355210.1, HORVU.MOREX.r3.4HG0380820.1, HORVU.MOREX.r3.5HG0471090.1, HORVU.MOREX.r3.5HG0490840.1, HORVU.MOREX.r3.6HG0573350.1, HORVU.MOREX.r3.7HG0670600.1
Poaceae	Lolium multiflorum	15	gene-QYE76_004301, gene-QYE76_006163, gene-QYE76_013910 ... gene-QYE76_014515, gene-QYE76_016656, gene-QYE76_021304, gene-QYE76_029308, gene-QYE76_037681, gene-QYE76_038640, gene-QYE76_052567, gene-QYE76_055892, gene-QYE76_056516, gene-QYE76_056529, gene-QYE76_065264, gene-QYE76_068359
Poaceae	Oryza coarctata	25	Oco01G008080, Oco01G022760, Oco01G025480, Oco02G008380 ... Oco02G023480, Oco02G026390, Oco03G005020, Oco04G004900, Oco05G012030, Oco06G014370, Oco09G010880, Oco09G012900, Oco10G010880, Oco10G013040, Oco11G006970, Oco12G007130, Oco13G016320, Oco14G017160, Oco17G001630, Oco17G007940, Oco18G001570, Oco18G008160, Oco21G001270, Oco22G002140, Oco24G001480
Poaceae	Oryza sativa	14	LOC_Os01g17260.2, LOC_Os01g59350.1, LOC_Os01g64020.1 ... LOC_Os02g10140.1, LOC_Os02g10150.1, LOC_Os03g20310.4, LOC_Os05g37170.1, LOC_Os05g41280.1, LOC_Os06g15480.2, LOC_Os07g48820.1, LOC_Os09g10840.2, LOC_Os09g31390.1, LOC_Os11g05480.1, LOC_Os12g05680.1
Poaceae	Paspalum vaginatum	14	gene-BS78_01G372100, gene-BS78_02G097800, gene-BS78_K171100 ... gene-BS78_02G224200, gene-BS78_02G395600, gene-BS78_03G122600, gene-BS78_03G311100, gene-BS78_03G344000, gene-BS78_04G073300, gene-BS78_05G052300, gene-BS78_08G026300, gene-BS78_09G161000, gene-BS78_09G186600, gene-BS78_10G113400
Poaceae	Puccinellia tenuiflora	21	Pt_Chr0103641, Pt_Chr0103644, Pt_Chr0107879, Pt_Chr0202144 ... Pt_Chr0202187, Pt_Chr0205232, Pt_Chr0305387, Pt_Chr0403612, Pt_Chr0404485, Pt_Chr0504420, Pt_Chr0504480, Pt_Chr0504845, Pt_Chr0601397, Pt_Chr0601771, Pt_Chr0603708, Pt_Chr0603722, Pt_Chr0605528, Pt_Chr0701594, Pt_Chr0702744, Pt_Chr0702823, Pt_Chr0705118
Poaceae	Sporobolus alterniflorus	38	Chr01G033290, Chr02G004000, Chr02G006850, Chr02G027320 ... Chr03G020650, Chr04G009870, Chr04G022290, Chr05G005070, Chr05G026560, Chr05G029280, Chr06G024040, Chr07G001850, Chr07G021210, Chr08G021610, Chr0G001460, Chr10G003170, Chr10G007230, Chr11G012090, Chr11G018170, Chr12G006290, Chr12G018570, Chr14G005370, Chr14G007320, Chr14G016290, Chr16G009550, Chr17G008580, Chr18G012730, Chr19G000120, Chr21G004810, Chr21G007080, Chr21G015270, Chr22G004990, Chr22G007030, Chr24G012030, Chr27G017730, Chr27G017760, Chr28G013500, Chr31G001070
Poaceae	Thinopyrum elongatum	12	Tel1E01G203400, Tel1E01G450400, Tel2E01G214200 ... Tel3E01G328100, Tel3E01G533400, Tel3E01G593700, Tel4E01G209100, Tel4E01G321900, Tel5E01G296100, Tel5E01G426400, Tel6E01G333700, Tel7E01G377500
Poaceae	Triticum dicoccoides	24	gene_TRIDC1AG016830, gene_TRIDC1AG041100 ... gene_TRIDC1BG018090, gene_TRIDC1BG046810, gene_TRIDC2AG011280, gene_TRIDC2BG014120, gene_TRIDC3AG026640, gene_TRIDC3AG048070, gene_TRIDC3AG053510, gene_TRIDC3BG031340, gene_TRIDC3BG054200, gene_TRIDC3BG060200, gene_TRIDC4AG017490, gene_TRIDC4AG029440, gene_TRIDC4BG021000, gene_TRIDC4BG034440, gene_TRIDC5AG019760, gene_TRIDC5AG028540, gene_TRIDC5BG029960, gene_TRIDC5BG043930, gene_TRIDC6AG023600, gene_TRIDC6BG029060, gene_TRIDC7AG026120, gene_TRIDC7BG016670
Poaceae	Triticum aestivum	35	TraesCS1A02G096300.1, TraesCS1A02G276600.2 ... TraesCS1B02G127400.1, TraesCS1B02G285800.1, TraesCS1D02G105300.1, TraesCS1D02G276100.2, TraesCS2A02G097500.2, TraesCS2B02G113200.2, TraesCS2D02G096800.2, TraesCS3A02G190700.2, TraesCS3A02G334100.1, TraesCS3A02G372400.2, TraesCS3B02G220400.2, TraesCS3B02G365100.1, TraesCS3B02G404800.2, TraesCS3D02G194800.2, TraesCS3D02G327600.1, TraesCS3D02G365200.3, TraesCS4A02G126300.2, TraesCS4A02G183400.2, TraesCS4B02G135000.1, TraesCS4B02G178600.1, TraesCS4D02G129900.1, TraesCS4D02G180200.4, TraesCS5A02G174200.1, TraesCS5A02G265600.1, TraesCS5B02G265300.1, TraesCS5D02G178800.1, TraesCS5D02G273500.1, TraesCS6A02G165800.1, TraesCS6B02G193200.2, TraesCS6D02G154400.1, TraesCS7A02G207100.1, TraesCS7B02G114300.1, TraesCS7D02G209800.1
Poaceae	Zea mays	18	Zm00001eb015150_P001, Zm00001eb094570_P001 ... Zm00001eb101910_P001, Zm00001eb147220_P003, Zm00001eb150360_P001, Zm00001eb197040_P002, Zm00001eb236380_P004, Zm00001eb280500_P003, Zm00001eb288970_P001, Zm00001eb310300_P001, Zm00001eb316720_P002, Zm00001eb331170_P002, Zm00001eb332590_P003, Zm00001eb352420_P005, Zm00001eb366880_P001, Zm00001eb369280_P001, Zm00001eb395640_P003, Zm00001eb406770_P001
Poaceae	Zoysia japonica	16	nbis-gene-10448, nbis-gene-11310, nbis-gene-14069 ... nbis-gene-19481, nbis-gene-25315, nbis-gene-28667, nbis-gene-28752, nbis-gene-31374, nbis-gene-32557, nbis-gene-3470, nbis-gene-40187, nbis-gene-43884, nbis-gene-44086, nbis-gene-45541, nbis-gene-46353, nbis-gene-49
Poaceae	Zoysia macrostachya	17	Zma_g11371, Zma_g11590, Zma_g15125, Zma_g17574, Zma_g25502 ... Zma_g27108, Zma_g28485, Zma_g29703, Zma_g30542, Zma_g31721, Zma_g31903, Zma_g32792, Zma_g3742, Zma_g5819, Zma_g7107, Zma_g7313, Zma_g9052
Portulacaceae	Portulaca oleracea	10	evm.TU.LG07.390, evm.TU.LG07.553, evm.TU.LG13.1123 ... evm.TU.LG13.645, evm.TU.LG15.389, evm.TU.LG15.556, evm.TU.LG19.1437, evm.TU.LG21.332, evm.TU.LG21.760, evm.TU.LG25.1335
Posidoniaceae	Posidonia oceanica	7	gene.Posoc01g21400, gene.Posoc01g30070, gene.Posoc02g06870 ... gene.Posoc02g23290, gene.Posoc03g10850, gene.Posoc05g22330, gene.Posoc07g11440
Rhizophoraceae	Bruguiera sexangula	8	evm.TU.Scaffold_11_RagTag.98, evm.TU.Scaffold_12_RagTag.549 ... evm.TU.Scaffold_13_RagTag.494, evm.TU.Scaffold_17_RagTag.929, evm.TU.Scaffold_1_RagTag.1222, evm.TU.Scaffold_2_RagTag.1127, evm.TU.Scaffold_7_RagTag.1622, evm.TU.Scaffold_8_RagTag.183
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-10153, nbisL1-mrna-23658, nbisL1-mrna-24186 ... nbisL1-mrna-30610, nbisL1-mrna-3766, nbisL1-mrna-6399, nbisL1-mrna-7186
Rhizophoraceae	Ceriops tagal	9	nbisL1-mrna-10419, nbisL1-mrna-13070, nbisL1-mrna-14393 ... nbisL1-mrna-19307, nbisL1-mrna-20215, nbisL1-mrna-20235, nbisL1-mrna-561, nbisL1-mrna-8011, nbisL1-mrna-8012
Rhizophoraceae	Ceriops zippeliana	8	nbisL1-mrna-13550, nbisL1-mrna-14480, nbisL1-mrna-15888 ... nbisL1-mrna-17809, nbisL1-mrna-19877, nbisL1-mrna-21934, nbisL1-mrna-22239, nbisL1-mrna-4212
Rhizophoraceae	Kandelia candel	8	evm.TU.utg000002l.95, evm.TU.utg000005l.331 ... evm.TU.utg000009l.555, evm.TU.utg000013l.519, evm.TU.utg000015l.266, evm.TU.utg000016l.772, evm.TU.utg000018l.881, evm.TU.utg000027l.232
Rhizophoraceae	Kandelia obovata	8	Maker00002789, Maker00004438, Maker00010276, Maker00011651 ... Maker00015230, Maker00016586, Maker00017830, Maker00017977
Rhizophoraceae	Rhizophora apiculata	8	nbisL1-mrna-10911, nbisL1-mrna-12459, nbisL1-mrna-13214 ... nbisL1-mrna-263, nbisL1-mrna-3123, nbisL1-mrna-4179, nbisL1-mrna-5753, nbisL1-mrna-7494
Rhizophoraceae	Rhizophora mangle	9	nbisL1-mrna-11421, nbisL1-mrna-12027, nbisL1-mrna-12314 ... nbisL1-mrna-13413, nbisL1-mrna-15248, nbisL1-mrna-15292, nbisL1-mrna-22041, nbisL1-mrna-23132, nbisL1-mrna-5602
Salicaceae	Populus euphratica	10	populus_peu04226, populus_peu07042, populus_peu08444 ... populus_peu10835, populus_peu11021, populus_peu26159, populus_peu26269, populus_peu35045, populus_peu35046, populus_peu36903
Solanaceae	Lycium barbarum	8	gene-LOC132600584, gene-LOC132604193, gene-LOC132607347 ... gene-LOC132607390, gene-LOC132607505, gene-LOC132635529, gene-LOC132641811, gene-LOC132643645
Solanaceae	Solanum chilense	7	SOLCI001149300, SOLCI001149400, SOLCI001795700 ... SOLCI002136500, SOLCI004691600, SOLCI006375900, SOLCI006875300
Solanaceae	Solanum pennellii	8	gene-LOC107001730, gene-LOC107002461, gene-LOC107002902 ... gene-LOC107004114, gene-LOC107007915, gene-LOC107018559, gene-LOC107023929, gene-LOC107032558
Tamaricaceae	Reaumuria soongarica	6	STRG.13742_chr05_+, gene_11456, gene_11898, gene_1248 ... gene_13482, gene_4079
Tamaricaceae	Tamarix chinensis	9	TC01G2141, TC01G3921, TC01G4376, TC02G0618, TC03G1770 ... TC04G0227, TC05G1974, TC06G1624, TC12G1975
Zosteraceae	Zostera marina	10	Zosma01g03990.v3.1, Zosma01g27420.v3.1, Zosma02g03110.v3.1 ... Zosma02g24010.v3.1, Zosma03g28550.v3.1, Zosma04g17860.v3.1, Zosma04g24230.v3.1, Zosma05g03430.v3.1, Zosma05g21360.v3.1, Zosma05g21370.v3.1