Basic Information
Locus ID:
Chr16G007490
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 10281911 | 10283331 | + | Chr16G007490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 41 | 379 | 9.9E-60 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 39 | 383 | 1.52E-53 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 280 | 350 | 3.93E-15 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 57 | 378 | 4.6E-86 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 279 | 350 | 4.6E-86 | IPR029070 |
| SMART | SM00636 | 2g34 | 38 | 379 | 1.6E-71 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 38 | 396 | 57.868599 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_004979247.1 | chitinase-3-like protein 1 [Setaria italica] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9UQG2 | GH18 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_28010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology