Basic Information
Locus ID:
Chr16G006940
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 8940574 | 8942343 | + | Chr16G006940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13768 | von Willebrand factor type A domain | 59 | 207 | 9.5E-21 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 401 | 468 | 2.0E-6 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 55 | 222 | 1.44E-26 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 59 | 231 | 7.8E-36 | IPR036465 |
| SMART | SM00327 | VWA_4 | 57 | 227 | 4.7E-19 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 59 | 229 | 16.610254 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 453 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08050.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_039777425.1 | uncharacterized protein LOC120644782 [Panicum virgatum] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811RQF5 | VWFA domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS56102 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology