Basic Information
Locus ID:
Chr16G006910
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 8918123 | 8919299 | + | Chr16G006910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 273 | 313 | 8.2E-7 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 35 | 87 | 1.05E-6 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 273 | 316 | 3.14E-8 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 102 | 221 | 9.02E-10 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 262 | 318 | 5.7E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 45 | 251 | 1.7E-14 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 271 | 313 | 10.738458 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_034607107.1 | F-box protein At1g67340-like isoform X2 [Setaria viridis] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UQT9 | MYND-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_27905 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology