Basic Information
Locus ID:
Chr16G006410
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Helix-loop-helix DNA-binding domain
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 7556341 | 7561606 | - | Chr16G006410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11443 | bHLH_AtAMS_like | 328 | 391 | 9.48083E-35 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 331 | 373 | 3.6E-10 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 327 | 394 | 4.19E-16 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 316 | 387 | 4.0E-16 | IPR036638 |
| SMART | SM00353 | finulus | 330 | 379 | 2.6E-14 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 324 | 373 | 15.287811 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 324 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26744.6 | - | 0 |
| RefSeq | XP_002449578.1 | transcription factor SCREAM2 [Sorghum bicolor] | 0 |
| Q9LSE2 | Transcription factor ICE1 OS=Arabidopsis thaliana OX=3702 GN=SCRM PE=1 SV=1 | 0 | |
| TrEMBL | A0A482KF71 | ICE1 OS=Zoysia japonica OX=309978 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology