Basic Information
Locus ID:
Chr16G004670
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 5211464 | 5217997 | + | Chr16G004670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 240 | 314 | 4.9976E-33 | - |
| CDD | cd12619 | RRM2_PUB1 | 122 | 196 | 5.11361E-47 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 123 | 193 | 1.6E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 59 | 112 | 1.6E-9 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 242 | 308 | 2.6E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 231 | 319 | 2.15E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 58 | 199 | 6.52E-39 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 120 | 216 | 1.6E-27 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 218 | 318 | 8.6E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 119 | 6.2E-15 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 241 | 310 | 2.1 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 122 | 195 | 1.0E-23 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 122 | 195 | 0.028 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 241 | 310 | 9.4E-19 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 38 | 114 | 7.5E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 240 | 314 | 16.278412 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 37 | 118 | 13.020831 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 121 | 199 | 18.001007 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | NP_001150056.2 | Oligouridylate-binding protein 1B [Zea mays] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UKX4 | Oligouridylate binding protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_26337 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology