Basic Information
Locus ID:
Chr16G004500
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Elongation factor 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 4946161 | 4954187 | + | Chr16G004500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16268 | EF2_II | 519 | 611 | 5.4423E-20 | - |
| CDD | cd01681 | aeEF2_snRNP_like_IV | 700 | 856 | 1.90076E-53 | - |
| Pfam | PF00009 | Elongation factor Tu GTP binding domain | 195 | 324 | 2.5E-41 | IPR000795 |
| Pfam | PF03764 | Elongation factor G, domain IV | 753 | 849 | 8.0E-17 | IPR005517 |
| Pfam | PF14492 | Elongation Factor G, domain III | 636 | 697 | 3.1E-6 | IPR041095 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 162 | 485 | 2.96E-52 | IPR027417 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 702 | 854 | 8.85E-37 | IPR020568 |
| SUPERFAMILY | SSF50447 | Translation proteins | 486 | 615 | 9.79E-22 | IPR009000 |
| SUPERFAMILY | SSF52047 | RNI-like | 922 | 1089 | 1.88E-7 | - |
| SUPERFAMILY | SSF54980 | EF-G C-terminal domain-like | 628 | 700 | 2.05E-10 | IPR035647 |
| Gene3D | G3DSA:3.90.1430.10 | Yeast translation eEF2 (G' domain) | 379 | 470 | 2.4E-11 | - |
| Gene3D | G3DSA:2.40.30.10 | Translation factors | 487 | 626 | 5.6E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 909 | 1119 | 3.7E-7 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 157 | 378 | 1.8E-43 | IPR027417 |
| Gene3D | G3DSA:3.30.70.870 | Elongation Factor G (Translational Gtpase), domain 3 | 629 | 706 | 2.1E-13 | - |
| Gene3D | G3DSA:3.30.230.10 | - | 710 | 850 | 2.7E-27 | IPR014721 |
| SMART | SM00889 | EFG_IV_2 | 741 | 850 | 2.6E-11 | IPR005517 |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 196 | 315 | 1.3E-13 | IPR005225 |
| ProSiteProfiles | PS51722 | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 196 | 365 | 28.759954 | IPR000795 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56070.1 | Ribosomal protein S5/Elongation factor G/III/V family protein. encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive. | 0 |
| RefSeq | XP_025818010.1 | elongation factor 2-like [Panicum hallii] | 0 |
| O23755 | Elongation factor 2 OS=Beta vulgaris OX=161934 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3HQQ4 | Tr-type G domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_5G120500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology