Basic Information
Locus ID:
Chr16G002620
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 2787286 | 2794511 | + | Chr16G002620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 700 | 966 | 3.64661E-96 | - |
| Pfam | PF11721 | Malectin domain | 427 | 613 | 2.8E-41 | IPR021720 |
| Pfam | PF13855 | Leucine rich repeat | 291 | 351 | 2.0E-6 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 697 | 901 | 2.0E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 677 | 983 | 2.19E-80 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 90 | 399 | 1.07E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 664 | 769 | 1.5E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 277 | 403 | 3.8E-21 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 770 | 978 | 6.0E-59 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 424 | 618 | 3.5E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 39 | 276 | 1.4E-51 | IPR032675 |
| SMART | SM00220 | serkin_6 | 694 | 964 | 7.2E-30 | IPR000719 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 23 | 5.0 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 694 | 974 | 35.862919 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 700 | 722 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 815 | 827 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 997 | 1029 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56140.1 | Leucine-rich repeat transmembrane protein kinase. | 0 |
| RefSeq | XP_039853302.1 | probable LRR receptor-like serine/threonine-protein kinase At1g56130 isoform X1 [Panicum virgatum] | 0 |
| C0LGH3 | Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana OX=3702 GN=At1g56140 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9W2N6 | Protein kinase domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_08580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology