Basic Information
Locus ID:
Chr16G002150
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 2171355 | 2180857 | + | Chr16G002150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 294 | 647 | 2.6781E-67 | - |
| CDD | cd18793 | SF2_C_SNF | 849 | 991 | 1.48335E-53 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 310 | 724 | 1.7E-67 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 880 | 981 | 2.0E-13 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 281 | 647 | 4.19E-45 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 751 | 808 | 7.86E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 655 | 1038 | 3.77E-54 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 753 | 813 | 7.9E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 414 | 506 | 3.0E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 662 | 1039 | 2.8E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 264 | 353 | 1.3E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 507 | 659 | 2.3E-30 | IPR038718 |
| SMART | SM00487 | ultradead3 | 290 | 628 | 1.5E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 898 | 981 | 1.5E-16 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 763 | 802 | 10.866448 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 868 | 1034 | 13.038465 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 438 | 609 | 12.212969 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 778 | 787 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 516 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 539 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_004957553.1 | helicase-like transcription factor CHR28 isoform X1 [Setaria italica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W4K6 | Helicase-like transcription factor CHR28 OS=Eragrostis curvula OX=38414 GN=EJB05_09494 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology