Basic Information
Locus ID:
Chr16G001930
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the cullin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 1784117 | 1786077 | - | Chr16G001930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00888 | Cullin family | 4 | 211 | 1.4E-56 | IPR001373 |
| Pfam | PF00888 | Cullin family | 227 | 358 | 7.6E-39 | IPR001373 |
| Pfam | PF10557 | Cullin protein neddylation domain | 385 | 432 | 2.0E-10 | IPR019559 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 366 | 440 | 5.45E-20 | IPR036390 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 4 | 211 | 5.49E-61 | IPR016159 |
| SUPERFAMILY | SSF75632 | Cullin homology domain | 193 | 363 | 2.09E-34 | IPR036317 |
| Gene3D | G3DSA:1.10.10.10 | - | 368 | 402 | 2.3E-6 | IPR036388 |
| Gene3D | G3DSA:1.10.10.10 | - | 403 | 441 | 9.6E-11 | IPR036388 |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 95 | 212 | 7.4E-34 | - |
| Gene3D | G3DSA:3.30.230.130 | Cullin; Chain C, Domain 2 | 226 | 367 | 7.7E-38 | - |
| Gene3D | G3DSA:1.20.1310.10 | Cullin Repeats | 1 | 93 | 1.7E-27 | - |
| SMART | SM00884 | Cullin_Nedd8_2 | 382 | 435 | 8.9E-18 | IPR019559 |
| ProSiteProfiles | PS50069 | Cullin family profile. | 97 | 329 | 19.084465 | IPR016158 |
| Coils | Coil | Coil | 175 | 195 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26830.1 | cullin 3. Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal. | 0 |
| RefSeq | XP_004974397.2 | cullin-3A [Setaria italica] | 0 |
| Q9ZVH4 | Cullin-3A OS=Arabidopsis thaliana OX=3702 GN=CUL3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W3P8 | CULLIN_2 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_09418 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Chr16G001930.