Basic Information
Locus ID:
Chr16G001690
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 1557286 | 1568246 | + | Chr16G001690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 916 | 949 | 0.0081 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 445 | 482 | 5.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 437 | 1047 | 8.63E-41 | IPR011047 |
| SUPERFAMILY | SSF63829 | Calcium-dependent phosphotriesterase | 336 | 474 | 4.25E-8 | - |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 975 | 1112 | 7.85E-8 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 320 | 563 | 3.1E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 564 | 681 | 8.6E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 760 | 1104 | 2.4E-28 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 867 | 907 | 0.76 | IPR001680 |
| SMART | SM00320 | WD40_4 | 335 | 374 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 441 | 482 | 6.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 572 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 910 | 949 | 3.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 822 | 864 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 575 | 615 | 45.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 395 | 435 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 526 | 0.023 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.4E-11 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1000 | 1042 | 9.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 964 | 998 | 200.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 448 | 491 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 917 | 958 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 917 | 951 | 10.574686 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 12.376768 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 469 | 483 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1105 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1122 | 1136 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_025820676.1 | protein TPR2 [Panicum hallii] | 0 |
| Q0J7U6 | Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W4S7 | TOPLESS OS=Eragrostis curvula OX=38414 GN=EJB05_09361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology