Basic Information
Locus ID:
Chr16G000990
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 882612 | 887228 | + | Chr16G000990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 21 | 124 | 9.8766E-45 | - |
| Pfam | PF00651 | BTB/POZ domain | 27 | 116 | 5.7E-9 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 215 | 480 | 2.9E-96 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 18 | 131 | 1.65E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 172 | 1.6E-13 | IPR011333 |
| SMART | SM00225 | BTB_4 | 29 | 123 | 9.1E-4 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 215 | 504 | 94.444397 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 99 | 11.274735 | IPR000210 |
| Coils | Coil | Coil | 546 | 573 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_025820258.1 | BTB/POZ domain-containing protein At1g30440-like [Panicum hallii] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9W5P7 | NPH3 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_09964 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology