Basic Information
Locus ID:
Chr16G000100
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
UBP2
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000016 | 108637 | 112755 | + | Chr16G000100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 182 | 770 | 1.8E-38 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 180 | 772 | 6.48E-66 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 143 | 2.47E-5 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 174 | 389 | 2.1E-26 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 544 | 775 | 8.8E-36 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 29 | 154 | 5.0E-5 | IPR013083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 181 | 773 | 33.594311 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 182 | 197 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 511 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 542 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_015649072.1 | ubiquitin carboxyl-terminal hydrolase 2 [Oryza sativa Japonica Group] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9W8M8 | USP domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_10241 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology