Basic Information
Locus ID:
Chr15G024720
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 50164828 | 50167138 | - | Chr15G024720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 198 | 242 | 7.7598E-6 | IPR018392 |
| Pfam | PF01476 | LysM domain | 200 | 243 | 1.1E-4 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 408 | 637 | 1.9E-34 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 388 | 639 | 3.46E-56 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 198 | 243 | 1.44E-5 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 444 | 651 | 4.8E-52 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 341 | 443 | 1.1E-9 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 189 | 250 | 8.8E-8 | IPR036779 |
| SMART | SM00257 | LysM_2 | 131 | 179 | 1.0 | IPR018392 |
| SMART | SM00257 | LysM_2 | 199 | 243 | 2.4E-4 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 198 | 242 | 10.162322 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 317 | 648 | 29.389545 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 276 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | NP_001147981.1 | protein kinase precursor [Zea mays] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6RXM9 | Protein LYK5-like OS=Panicum miliaceum OX=4540 GN=C2845_PM11G00210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology