Basic Information
Locus ID:
Chr15G023830
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 48901503 | 48907455 | - | Chr15G023830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 58 | 213 | 1.36533E-26 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 89 | 165 | 2.2E-8 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 19 | 362 | 1.1E-106 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 427 | 496 | 4.1E-6 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 366 | 424 | 7.2E-10 | IPR007010 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 364 | 490 | 1.28E-35 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 214 | 363 | 8.89E-65 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 18 | 211 | 1.31E-47 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 365 | 480 | 2.4E-25 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 51 | 207 | 2.1E-154 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 20 | 361 | 2.1E-154 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 9 | 659 | 8.1E-212 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 621 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_025800443.1 | nuclear poly(A) polymerase 4-like isoform X2 [Panicum hallii] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VA70 | polynucleotide adenylyltransferase OS=Eragrostis curvula OX=38414 GN=EJB05_24938 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology