Basic Information
Locus ID:
Chr15G022750
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 47342112 | 47344352 | - | Chr15G022750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 108 | 235 | 1.84289E-68 | - |
| Pfam | PF03145 | Seven in absentia protein family | 36 | 235 | 1.1E-81 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 47 | 239 | 1.05E-51 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 102 | 237 | 1.0E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 42 | 101 | 2.6E-18 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 47 | 107 | 14.236708 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27880.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_002453731.1 | E3 ubiquitin-protein ligase SINAT5 [Sorghum bicolor] | 0 |
| Q9STN8 | E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana OX=3702 GN=SINAT4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A023ZS55 | RING-type E3 ubiquitin transferase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology