halophFGD

Basic Information

Locus ID: Chr15G020780

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: Variant SH3 domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000015	44031510	44036271	+	Chr15G020780

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14604	Variant SH3 domain	308	356	8.4E-10	IPR001452
SUPERFAMILY	SSF50044	SH3-domain	262	358	5.12E-17	IPR036028
SUPERFAMILY	SSF103657	BAR/IMD domain-like	45	256	3.66E-24	IPR027267
Gene3D	G3DSA:2.30.30.40	SH3 Domains	304	358	2.1E-16	-
Gene3D	G3DSA:1.20.1270.60	Arfaptin homology (AH) domain/BAR domain	43	265	3.6E-10	IPR027267
SMART	SM00326	SH3_2	304	359	4.8E-13	IPR001452
ProSiteProfiles	PS50002	Src homology 3 (SH3) domain profile.	301	360	20.148815	IPR001452
Coils	Coil	Coil	147	174	-	-
Coils	Coil	Coil	184	211	-	-
Coils	Coil	Coil	242	262	-	-
Coils	Coil	Coil	1	21	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11247 (endophilin-A)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G34660.1	SH3 domain-containing protein.
RefSeq	XP_015612895.1	SH3 domain-containing protein 2 [Oryza sativa Japonica Group]
Swiss-Prot	Q8VWF1	SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1
TrEMBL	Q337C1	Os10g0512700 protein OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g36870 PE=1 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10573, jg23675, jg28802, jg958
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14671, gene_21693
Amaranthaceae	Atriplex hortensis	2	Ah004698, Ah010152
Amaranthaceae	Beta vulgaris	2	BVRB_5g108390, BVRB_9g216600
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg12362, Sbi_jg45977
Amaranthaceae	Salicornia europaea	1	Seu_jg20309
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005626, GOSA_00010861
Amaranthaceae	Suaeda glauca	5	Sgl52502, Sgl52503, Sgl56203, Sgl57767, Sgl61698
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000006269, gene:ENSEOMG00000014000 ... gene:ENSEOMG00000021582, gene:ENSEOMG00000022949, gene:ENSEOMG00000036857, gene:ENSEOMG00000051416
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0016560, CQ.Regalona.r1.5AG0000840 ... CQ.Regalona.r1.7BG0006910, CQ.Regalona.r1.9AG0017740
Anacardiaceae	Pistacia vera	1	pistato.v30115530
Apiaceae	Apium graveolens	5	Ag3G02502, Ag7G01217, Ag8G02039, Ag9G00012, Ag9G02695
Arecaceae	Cocos nucifera	5	COCNU_07G015570, COCNU_10G004570, COCNU_10G009660 ... scaffold006747G000010, scaffold030283G000020
Arecaceae	Phoenix dactylifera	4	gene-LOC103708484, gene-LOC103712197, gene-LOC103716668 ... gene-LOC103718969
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.1063.V1.1, AsparagusV1_04.3578.V1.1 ... AsparagusV1_08.7.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G18432, Ftri13G07504, Ftri3G25762
Brassicaceae	Arabidopsis thaliana	2	AT1G31440.1, AT4G34660.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007690m.g.v1.0, Thhalv10025489m.g.v1.0 ... Thhalv10025594m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g27240.v2.2, Sp7g32450.v2.2, Sp7g36810.v2.2
Brassicaceae	Brassica nigra	5	BniB03g015470.2N, BniB03g020770.2N, BniB04g047260.2N ... BniB05g003650.2N, BniB07g019180.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G0728, Ceq07G1502
Casuarinaceae	Casuarina glauca	4	Cgl01G0326, Cgl01G0347, Cgl01G0903, Cgl07G1581
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno10g07270, gene.Cymno18g04880
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g06050, gene.Thate04g13470, gene.Thate08g20500
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-9451
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.950, evm.TU.LG08.209
Plantaginaceae	Plantago ovata	2	Pov_00028637, Pov_00035860
Plumbaginaceae	Limonium bicolor	3	Lb1G04944, Lb2G13505, Lb2G14218
Poaceae	Echinochloa crus-galli	6	AH01.1601, AH01.4234, BH01.1797, BH01.4538, CH01.1889 ... CH09.2080
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0113660, gene-QOZ80_2BG0166820 ... gene-QOZ80_3AG0242310, gene-QOZ80_3BG0285840, gene-QOZ80_4AG0308990, gene-QOZ80_4BG0340010
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0049610.1, HORVU.MOREX.r3.2HG0184890.1 ... HORVU.MOREX.r3.4HG0389410.1
Poaceae	Lolium multiflorum	2	gene-QYE76_012039, gene-QYE76_069087
Poaceae	Oryza coarctata	6	Oco05G009130, Oco06G009480, Oco07G011840, Oco08G011520 ... Oco19G007940, Oco20G007770
Poaceae	Oryza sativa	3	LOC_Os03g16000.1, LOC_Os04g45670.1, LOC_Os10g36870.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G178200, gene-BS78_01G406000 ... gene-BS78_06G173700
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0102216, Pt_Chr0102237, Pt_Chr0201617, Pt_Chr0502878
Poaceae	Sporobolus alterniflorus	9	Chr04G007410, Chr06G029520, Chr07G004230, Chr12G008960 ... Chr15G020780, Chr23G007710, Chr25G006370, Chr26G012040, Chr30G006170
Poaceae	Thinopyrum elongatum	3	Tel1E01G318400, Tel2E01G666700, Tel4E01G372700
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG027150, gene_TRIDC1BG033820 ... gene_TRIDC2AG055920, gene_TRIDC2BG058810, gene_TRIDC4AG012550, gene_TRIDC4BG037740
Poaceae	Triticum aestivum	9	TraesCS1A02G177700.1, TraesCS1B02G202500.1 ... TraesCS1D02G176200.1, TraesCS2A02G388400.1, TraesCS2B02G406500.2, TraesCS2D02G386200.1, TraesCS4A02G092400.1, TraesCS4B02G211900.1, TraesCS4D02G212700.1
Poaceae	Zea mays	5	Zm00001eb011910_P001, Zm00001eb043690_P001 ... Zm00001eb075310_P001, Zm00001eb220370_P001, Zm00001eb427590_P002
Poaceae	Zoysia japonica	5	nbis-gene-2138, nbis-gene-34380, nbis-gene-3797 ... nbis-gene-45425, nbis-gene-5403
Poaceae	Zoysia macrostachya	5	Zma_g15510, Zma_g1564, Zma_g20147, Zma_g21703, Zma_g3958
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.311, evm.TU.LG04.2919, evm.TU.LG08.1430 ... evm.TU.LG09.1545, evm.TU.LG16.695, evm.TU.LG22.326
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g13140, gene.Posoc07g02150
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_14_RagTag.736, evm.TU.Scaffold_1_RagTag.2225 ... evm.TU.Scaffold_2_RagTag.166
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-17696, nbisL1-mrna-24848, nbisL1-mrna-5042
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-13000, nbisL1-mrna-3615, nbisL1-mrna-9942
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-17081, nbisL1-mrna-3323, nbisL1-mrna-9416
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000007l.27, evm.TU.utg000009l.1134 ... evm.TU.utg000016l.136
Rhizophoraceae	Kandelia obovata	3	Maker00005332, Maker00016004, Maker00016745
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-14171, nbisL1-mrna-15841, nbisL1-mrna-4695
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-14145, nbisL1-mrna-21084, nbisL1-mrna-9024
Salicaceae	Populus euphratica	4	populus_peu03315, populus_peu08816, populus_peu36543 ... populus_peu38040
Solanaceae	Lycium barbarum	6	gene-LOC132599224, gene-LOC132618301, gene-LOC132627248 ... gene-LOC132628910, gene-LOC132635513, gene-LOC132637261
Solanaceae	Solanum chilense	3	SOLCI002772300, SOLCI004158400, SOLCI006056800
Solanaceae	Solanum pennellii	3	gene-LOC107008510, gene-LOC107024051, gene-LOC107026685
Tamaricaceae	Reaumuria soongarica	3	gene_14825, gene_17790, gene_7846
Tamaricaceae	Tamarix chinensis	3	TC01G4622, TC10G0417, TC12G0978
Zosteraceae	Zostera marina	3	Zosma01g31190.v3.1, Zosma03g26250.v3.1, Zosma05g30410.v3.1