Basic Information
Locus ID:
Chr15G020400
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 43056909 | 43061184 | + | Chr15G020400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 229 | 254 | 4.9E-5 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 112 | 206 | 1.8E-7 | - |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 98 | 3.0E-15 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 281 | 6.84E-47 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 322 | 383 | 2.18E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 311 | 398 | 1.8E-8 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 143 | 2.3E-32 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 144 | 278 | 5.5E-21 | IPR036770 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 8.0E-6 | IPR002110 |
| SMART | SM00184 | ring_2 | 327 | 376 | 6.3E-4 | IPR001841 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 0.74 | IPR002110 |
| SMART | SM00248 | ANK_2a | 228 | 260 | 0.014 | IPR002110 |
| SMART | SM00248 | ANK_2a | 185 | 214 | 9.7E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.038 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 8.60279 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.13699 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 327 | 377 | 10.128798 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 228 | 254 | 10.39236 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 228 | 254 | 10.365044 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 185 | 214 | 11.930395 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.118069 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.93306 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 185 | 217 | 12.60929 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.814123 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 342 | 351 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 201 | 215 | 3.1E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 45 | 60 | 3.1E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_044400656.1 | probable E3 ubiquitin-protein ligase XBOS33 [Triticum aestivum] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5YXK7 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology