Basic Information
Locus ID:
Chr15G019520
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 40747827 | 40751983 | + | Chr15G019520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 36 | 197 | 4.90864E-36 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 802 | 843 | 1.73714E-20 | - |
| Pfam | PF00069 | Protein kinase domain | 516 | 718 | 4.0E-43 | IPR000719 |
| Pfam | PF04564 | U-box domain | 798 | 869 | 2.6E-17 | IPR003613 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 51 | 187 | 1.0E-9 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 497 | 777 | 4.72E-67 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 786 | 868 | 2.03E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 588 | 792 | 1.3E-46 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 797 | 871 | 1.0E-25 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 493 | 587 | 8.6E-29 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 44 | 193 | 1.1E-8 | IPR014729 |
| SMART | SM00504 | Ubox_2 | 801 | 864 | 2.5E-25 | IPR003613 |
| SMART | SM00220 | serkin_6 | 515 | 775 | 1.3E-32 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 797 | 871 | 32.182423 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 515 | 781 | 34.152706 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 633 | 645 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 521 | 542 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 315 | - | - |
| Coils | Coil | Coil | 350 | 370 | - | - |
| Coils | Coil | Coil | 390 | 431 | - | - |
| Coils | Coil | Coil | 460 | 487 | - | - |
| Coils | Coil | Coil | 117 | 137 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_004986828.1 | U-box domain-containing protein 33 isoform X1 [Setaria italica] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9V6H1 | E3 ubiquitin ligase OS=Eragrostis curvula OX=38414 GN=EJB05_23483 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology