Basic Information
Locus ID:
Chr15G017140
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 29871248 | 29878498 | + | Chr15G017140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 47 | 173 | 8.24E-18 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 24 | 184 | 1.5E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 33 | 76 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 79 | 119 | 2.2E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 86 | 119 | 9.309238 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 86 | 119 | 11.109979 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03020.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_039851077.1 | LEC14B homolog isoform X5 [Panicum virgatum] | 0 |
| Q40153 | LEC14B protein OS=Lithospermum erythrorhizon OX=34254 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1E5W4N6 | LEC14B-like protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0006605 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2966 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr15G017140 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG065010, gene_TRIDC5BG061510 ... |