Basic Information
Locus ID:
Chr15G015460
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
short chain dehydrogenase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 23404428 | 23405978 | - | Chr15G015460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 435 | 505 | 7.08979E-7 | - |
| CDD | cd02958 | UAS | 240 | 358 | 1.20981E-28 | - |
| Pfam | PF00789 | UBX domain | 430 | 503 | 3.5E-5 | IPR001012 |
| Pfam | PF14555 | UBA-like domain | 4 | 43 | 3.5E-7 | - |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 218 | 361 | 1.43E-20 | IPR036249 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 381 | 510 | 6.46E-8 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 423 | 513 | 3.0E-7 | - |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 242 | 362 | 9.0E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 1 | 48 | 2.1E-5 | - |
| SMART | SM00594 | 45neu3 | 228 | 356 | 1.3E-4 | IPR006577 |
| ProSiteProfiles | PS50033 | UBX domain profile. | 429 | 513 | 13.606087 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 407 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004955104.1 | plant UBX domain-containing protein 7 [Setaria italica] | 0 |
| TrEMBL | A0A5J9V162 | UBX domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_20603 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH03.861, AH07.2773, BH03.985, BH07.2584, CH07.2650 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0138910, gene-QOZ80_2BG0194560 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0117420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_007415, gene-QYE76_023963, gene-QYE76_023966 ... |
| Poaceae | Oryza coarctata | 3 | Oco04G017190, Oco13G005150, Oco14G006110 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g42800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G208100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G013060, Chr09G024940, Chr09G024970, Chr15G015460 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2BG020080, gene_TRIDC6AG036470 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G133200.1.cds1, TraesCS2B02G156700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb185740_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27667, nbis-gene-9357 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13983 |