Basic Information
Locus ID:
Chr15G014160
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 17729761 | 17760306 | + | Chr15G014160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1003 | 1225 | 5.12743E-111 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 450 | 641 | 2.26391E-90 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 135 | 424 | 6.58547E-80 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 721 | 980 | 1.64447E-57 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 136 | 365 | 2.2E-12 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1024 | 1172 | 5.9E-26 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 723 | 944 | 3.3E-24 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 468 | 590 | 6.0E-17 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 446 | 661 | 5.53E-47 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 995 | 1238 | 1.58E-63 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 129 | 424 | 2.22E-19 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 709 | 986 | 8.37E-40 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 431 | 676 | 2.9E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 990 | 1243 | 1.1E-73 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 114 | 430 | 5.5E-32 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 693 | 986 | 6.5E-41 | IPR036640 |
| SMART | SM00382 | AAA_5 | 477 | 641 | 6.9E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1033 | 1218 | 3.5E-10 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 450 | 664 | 20.061478 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1005 | 1241 | 17.560492 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 723 | 944 | 26.38763 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 134 | 416 | 20.852655 | IPR011527 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034569184.1 | ABC transporter C family member 3-like [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V2I4 | ABC transporter C family member 3 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_21833 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology