Basic Information
Locus ID:
Chr15G013490
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 16056097 | 16064951 | - | Chr15G013490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 250 | 314 | 1.53667E-17 | - |
| CDD | cd16872 | ARID_HMGB9-like | 46 | 131 | 1.10267E-39 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 250 | 317 | 3.3E-14 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 50 | 131 | 3.8E-18 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 241 | 321 | 2.88E-20 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 41 | 147 | 6.54E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 233 | 327 | 3.3E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 36 | 152 | 3.6E-27 | IPR036431 |
| SMART | SM00398 | hmgende2 | 249 | 318 | 1.1E-16 | IPR009071 |
| SMART | SM01014 | ARID_2 | 41 | 131 | 5.3E-25 | - |
| SMART | SM00501 | bright_3 | 45 | 136 | 1.0E-25 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 44 | 135 | 24.277376 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 250 | 317 | 14.787141 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 407 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 406 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_025809830.1 | high mobility group B protein 15-like [Panicum hallii] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835KNC7 | ARID domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_010568 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology