Basic Information
Locus ID:
Chr15G012410
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 13777859 | 13779650 | + | Chr15G012410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 314 | 345 | 0.021 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 208 | 239 | 0.094 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 47 | 348 | 4.76E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 30 | 408 | 7.8E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 305 | 345 | 4.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 153 | 198 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 201 | 239 | 4.3E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 348 | 8.940149 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 348 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 208 | 248 | 8.770704 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 332 | 346 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_039843239.1 | WD repeat-containing protein LWD1-like [Panicum virgatum] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9V3F5 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_21492 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology