Basic Information
Locus ID:
Chr15G010870
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 11655120 | 11656091 | + | Chr15G010870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 117 | 160 | 2.34523E-17 | - |
| Pfam | PF13639 | Ring finger domain | 117 | 160 | 3.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 101 | 169 | 8.48E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 80 | 165 | 2.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 118 | 159 | 6.8E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 118 | 160 | 11.235273 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 292 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27420.1 | carbon/nitrogen insensitive 1. Encodes CNI1 (Carbon/Nitrogen Insensitive1) (also named as ATL31), a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings. | 0 |
| RefSeq | XP_034602754.1 | RING-H2 finger protein ATL38-like [Setaria viridis] | 0 |
| Q8LGA5 | E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9V237 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_21158 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.2290, BH06.2109, CH07.2182 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0134800, gene-QOZ80_2BG0190410 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0314400.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022959, gene-QYE76_023123 |
| Poaceae | Oryza coarctata | 1 | Oco04G013130 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g36320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G171100 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G009350, Chr09G013690, Chr13G009540, Chr15G010870 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G726900, Tel5E01G688100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG064960, gene_TRIDC3BG073300 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G459700.1, TraesCS3B02G499500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb244640_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20683 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13737 |