Basic Information
Locus ID:
Chr15G008330
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 8293489 | 8300498 | - | Chr15G008330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 524 | 583 | 7.1E-6 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 522 | 591 | 6.78E-13 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 402 | 462 | 3.8E-9 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 517 | 593 | 2.1E-7 | - |
| SMART | SM00358 | DRBM_3 | 398 | 462 | 0.0068 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 521 | 587 | 0.0088 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 426 | 463 | 9.149329 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 520 | 588 | 10.605907 | IPR014720 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_002452510.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Sorghum bicolor] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V0Y9 | protein-serine/threonine phosphatase OS=Eragrostis curvula OX=38414 GN=EJB05_20614 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology