Basic Information
Locus ID:
Chr15G006520
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 6075094 | 6076176 | + | Chr15G006520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_025824179.1 | probable E3 ubiquitin-protein ligase ARI8 [Panicum hallii] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453P127 | BRCT domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah025137 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000017279 |
| Apiaceae | Apium graveolens | 2 | Ag5G02704, Ag8G01154 |
| Brassicaceae | Brassica nigra | 1 | BniB02g032340.2N |
| Poaceae | Sporobolus alterniflorus | 1 | Chr15G006520 |
| Poaceae | Zea mays | 9 | Zm00001eb177610_P001, Zm00001eb186210_P001 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.214 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19746 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003664 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17967 |