Basic Information
Locus ID:
Chr15G006110
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 5590678 | 5591975 | - | Chr15G006110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 201 | 355 | 1.80036E-72 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 4 | 176 | 8.26828E-61 | - |
| Pfam | PF00190 | Cupin | 7 | 157 | 2.2E-22 | IPR006045 |
| Pfam | PF00190 | Cupin | 199 | 339 | 6.3E-19 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 9 | 346 | 5.45E-46 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 3 | 197 | 5.0E-28 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 198 | 360 | 1.1E-46 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 198 | 342 | 1.7E-12 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 160 | 3.1E-30 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 319 | 336 | 2.7E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 279 | 294 | 2.7E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 214 | 234 | 2.7E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 261 | 277 | 2.7E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 297 | 315 | 2.7E-12 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_034569400.1 | 11S globulin seed storage protein 2-like [Setaria viridis] | 0 |
| Q8GZP6 | 11S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occidentale OX=171929 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TF64 | 11S seed storage protein OS=Eragrostis curvula OX=38414 GN=EJB05_43444 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology