Basic Information
Locus ID:
Chr15G006030
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 5546930 | 5550164 | + | Chr15G006030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 65 | 4.9E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 78 | 6.11E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 73 | 1.4E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 4 | 73 | 8.0E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 3 | 77 | 10.940072 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 371 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_039791026.1 | binding partner of ACD11 1-like isoform X2 [Panicum virgatum] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811SR49 | RRM domain-containing protein (Fragment) OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS67110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology