Basic Information
Locus ID:
Chr15G004030
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 3437165 | 3439125 | + | Chr15G004030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 48 | 120 | 2.5E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 153 | 427 | 1.44E-19 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 37 | 124 | 7.77E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 126 | 456 | 5.3E-18 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 125 | 1.0E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 51 | 115 | 3.7E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 47 | 122 | 31.536686 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 47 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_039791383.1 | U-box domain-containing protein 21-like [Panicum virgatum] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UYX5 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_19965 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology